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UMAP gene cluster
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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249 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ABCA7
ENSSSCG00000023121
ENSG00000064687
ATP binding cassette subfamily A member 7
Tissue enhanced
Detected in many
lymphoid tissue:
29.4
ACAP1
ENSSSCG00000017943
ENSG00000072818
ArfGAP with coiled-coil, ankyrin repeat and PH domains 1
Tissue enhanced
Detected in many
lymphoid tissue:
47.0
stomach:
33.7
ACP5
ENSSSCG00000032282
ENSG00000102575
Tartrate-resistant acid phosphatase type 5
Tissue enhanced
Detected in all
bone marrow:
45.5
dura mater:
103.0
ADGRG5
ENSSSCG00000025503
ENSG00000159618
Adhesion G protein-coupled receptor G5
Tissue enhanced
Detected in many
lymphoid tissue:
25.7
stomach:
22.1
AFMID
ENSSSCG00000033636
ENSG00000183077
Arylformamidase
Tissue enhanced
Detected in all
liver:
63.4
stomach:
37.8
AKNA
ENSSSCG00000023894
ENSG00000106948
AT-hook transcription factor
Tissue enhanced
Detected in many
lymphoid tissue:
50.5
stomach:
46.5
AOAH
ENSSSCG00000016657
ENSG00000136250
Acyloxyacyl hydrolase
Tissue enriched
Detected in many
lymphoid tissue:
116.5
APOBEC3B
ENSSSCG00000000091
ENSG00000100298
DNA dC->dU-editing enzyme APOBEC-3B
Tissue enhanced
Detected in all
lymphoid tissue:
44.2
ARHGAP15
ENSSSCG00000015671
ENSG00000075884
Rho GTPase activating protein 15
Tissue enriched
Detected in many
lymphoid tissue:
58.4
ARHGAP9
ENSSSCG00000000437
ENSG00000123329
Rho GTPase activating protein 9
Tissue enhanced
Detected in many
lymphoid tissue:
39.7
stomach:
22.3
BCL11B
ENSSSCG00000002507
ENSG00000127152
B-cell lymphoma/leukemia 11B
Tissue enriched
Detected in many
lymphoid tissue:
85.3
BLK
ENSSSCG00000027568
ENSG00000136573
BLK proto-oncogene, Src family tyrosine kinase
Tissue enhanced
Detected in many
lymphoid tissue:
32.5
stomach:
14.4
upper respiratory system:
14.3
BLNK
ENSSSCG00000010504
ENSG00000095585
B cell linker
Tissue enhanced
Detected in many
lymphoid tissue:
38.4
small intestine:
27.2
CASS4
ENSSSCG00000007495
ENSG00000087589
Cas scaffolding protein family member 4
Low tissue specificity
Detected in all
CBL
ENSSSCG00000015115
ENSG00000110395
Cbl proto-oncogene
Tissue enhanced
Detected in all
lymphoid tissue:
74.6
CBX4
ENSSSCG00000017160
ENSG00000141582
Chromobox 4
Low tissue specificity
Detected in all
CCL17
ENSSSCG00000023852
ENSG00000102970
C-C motif chemokine 17 precursor
Group enriched
Detected in some
lymphoid tissue:
32.7
ovary:
21.7
CCL22
ENSSSCG00000002821
ENSG00000102962
C-C motif chemokine 22 precursor
Group enriched
Detected in some
lymphoid tissue:
35.1
testis:
57.7
CCL4
ENSSSCG00000038096
ENSG00000275302,ENSG00000276070
C-C motif chemokine 4
Tissue enhanced
Detected in some
bone marrow:
11.2
liver:
4.3
CCNG2
ENSSSCG00000008988
ENSG00000138764
Cyclin G2
Tissue enhanced
Detected in all
brain:
47.2
CCR3
ENSSSCG00000024408
ENSG00000183625
C-C chemokine receptor type 3
Tissue enhanced
Detected in some
epididymis:
5.0
lymphoid tissue:
6.0
CCR7
ENSSSCG00000017466
ENSG00000126353
C-C motif chemokine receptor 7
Tissue enriched
Detected in many
lymphoid tissue:
42.2
CD2
ENSSSCG00000006736
ENSG00000116824
T-cell surface antigen CD2 precursor
Tissue enhanced
Detected in many
large intestine:
23.1
lymphoid tissue:
82.5
small intestine:
26.9
stomach:
27.7
CD200R1
ENSSSCG00000011925
ENSG00000163606
Cell surface glycoprotein CD200 receptor 2 precursor
Tissue enhanced
Detected in many
lymphoid tissue:
39.1
testis:
12.5
CD226
ENSSSCG00000038398
ENSG00000150637
CD226 molecule
Tissue enhanced
Detected in many
lymphoid tissue:
24.6
stomach:
16.0
testis:
16.3
CD244
ENSSSCG00000006374
ENSG00000122223
CD244 molecule
Tissue enriched
Detected in some
lymphoid tissue:
43.3
CD27
ENSSSCG00000000705
ENSG00000139193
CD27 antigen precursor
Tissue enriched
Detected in many
lymphoid tissue:
73.8
CD3D
ENSSSCG00000015093
ENSG00000167286
T-cell surface glycoprotein CD3 delta chain
Tissue enriched
Detected in all
lymphoid tissue:
95.4
CD3E
ENSSSCG00000040140
ENSG00000198851
T-cell surface glycoprotein CD3 epsilon chain precursor
Tissue enriched
Detected in many
lymphoid tissue:
71.1
CD4
ENSSSCG00000000687
ENSG00000010610
CD4 molecule
Tissue enriched
Detected in many
lymphoid tissue:
100.2
CD40LG
ENSSSCG00000030172
ENSG00000102245
CD40 ligand
Tissue enhanced
Detected in many
lymphoid tissue:
20.6
small intestine:
6.8
CD5
ENSSSCG00000013115
ENSG00000110448
T-cell surface glycoprotein CD5 precursor
Tissue enhanced
Detected in many
lymphoid tissue:
28.9
stomach:
15.4
CD6
ENSSSCG00000013111
ENSG00000013725
CD6 molecule
Tissue enhanced
Detected in many
lymphoid tissue:
35.4
stomach:
30.2
CD69
ENSSSCG00000000653
ENSG00000110848
Early activation antigen CD69
Tissue enhanced
Detected in some
large intestine:
11.4
lung:
15.8
lymphoid tissue:
28.4
upper respiratory system:
14.3
CD72
ENSSSCG00000005311
ENSG00000137101
B-cell differentiation antigen CD72
Tissue enriched
Detected in many
lymphoid tissue:
34.7
CD8A
ENSSSCG00000008217
ENSG00000153563
T-cell surface glycoprotein CD8 alpha chain precursor
Tissue enriched
Detected in many
lymphoid tissue:
80.2
CD96
ENSSSCG00000023993
ENSG00000153283
T-cell surface protein tactile
Tissue enhanced
Detected in many
large intestine:
22.3
lymphoid tissue:
27.2
CDC14A
ENSSSCG00000006864
ENSG00000079335
Cell division cycle 14A
Low tissue specificity
Detected in all
CGAS
ENSSSCG00000021383
ENSG00000164430
Cyclic GMP-AMP synthase
Tissue enhanced
Detected in all
lymphoid tissue:
24.0
CLNK
ENSSSCG00000022448
ENSG00000109684
Cytokine dependent hematopoietic cell linker
Tissue enhanced
Detected in many
lymphoid tissue:
15.1
salivary gland:
8.3
stomach:
7.5
CORO1A
ENSSSCG00000038055
ENSG00000102879
Coronin 1A
Tissue enhanced
Detected in many
lymphoid tissue:
109.8
upper respiratory system:
54.6
CRLF3
ENSSSCG00000017743
ENSG00000176390
Cytokine receptor-like factor 3
Tissue enhanced
Detected in all
lymphoid tissue:
57.9
CST7
ENSSSCG00000007131
ENSG00000077984
Cystatin-F precursor
Tissue enhanced
Detected in many
lymphoid tissue:
25.1
stomach:
21.1
CTSW
ENSSSCG00000012970
ENSG00000172543
Cathepsin W
Tissue enriched
Detected in many
lymphoid tissue:
70.7
CXCR4
ENSSSCG00000039416
ENSG00000121966
C-X-C chemokine receptor type 4
Tissue enhanced
Detected in all
lymphoid tissue:
33.9
ovary:
25.7
DAPP1
ENSSSCG00000039327
ENSG00000070190
Dual adaptor of phosphotyrosine and 3-phosphoinositides 1
Tissue enhanced
Detected in many
lymphoid tissue:
41.9
upper respiratory system:
23.0
DENND1C
ENSSSCG00000013546
ENSG00000205744
DENN domain containing 1C
Tissue enhanced
Detected in many
lymphoid tissue:
43.0
stomach:
51.9
DENND2D
ENSSSCG00000025704
ENSG00000162777
DENN domain containing 2D
Tissue enhanced
Detected in many
lymphoid tissue:
32.2
male glands:
30.5
stomach:
38.9
DGKA
ENSSSCG00000000370
ENSG00000065357
Diacylglycerol kinase alpha
Tissue enhanced
Detected in all
lymphoid tissue:
66.1
DUSP2
ENSSSCG00000035971
ENSG00000158050
Dual specificity phosphatase 2
Low tissue specificity
Detected in all
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